Skip to main content

A Buildout recipe installing Grape RNA-Seq pipelines

Project description

The grape.recipe.pipeline package is a Buildout recipe used for configuring Grape, a pipeline used for processing and analyzing RNA-Seq data. RNA-Seq is a next generation sequencing technology used to sequence cellular RNA. To run Grape, you need the read files in Fasta, FastQ or prealigned SAM/BAM formats, as well as a genome and a gene transcript annotation. First, Grape does the quality control and then aligns the reads to the genome. The core of Grape is the analysis of the transcriptome. Grape quantifies Gene and transcript expression levels, estimates exon inclusion levels, and discovers novel splice forms for you, and includes a powerful web application that allows you to seamlessly publish your summary statistics locally or on the Internet. While Grape can run on a standalone machine with modest hardware requirements, it is designed to run in parallel on a computer cluster. Grape comes with its own default mapping and quantification tools, and makes it easy to replace any of these tools with your own, given that they support popular data interchange formats. Grape is being actively developed at the CRG, and is used in dozens of projects with massive datasets, like the Illumina Body Map Project (HBM) and the ENCODE project.

Project details


Release history Release notifications

History Node

1.1.16

History Node

1.1.15

History Node

1.1.14

History Node

1.1.13

History Node

1.1.12

History Node

1.1.11

History Node

1.1.10

This version
History Node

1.1.9

History Node

1.1.8

History Node

1.1.7

History Node

1.1.6

History Node

1.1.5

History Node

1.1.3

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
grape.recipe.pipeline-1.1.9.zip (41.3 kB) Copy SHA256 hash SHA256 Source None Aug 23, 2012

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging CloudAMQP CloudAMQP RabbitMQ AWS AWS Cloud computing Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page