graph-partition 0.1.16

Graph Partitioning Algorithms

Graph Partitioning

Graph Partitioning is an age-old problem with applications in various domains, such as routing vehicles for delivery and finding the right target for immunizations to control a pandemic. Graph Partitioning involves partitioning a graph’s vertices into roughly equal-sized subsets such that the total edge cost spanning the subsets is at most k. In this package we have implemented three major algorithms -

Authors

• @somsubhra88

Graph Convolution Networks (GCN)

Graph Convolution Networks use neural networks on structured graphs. Graph convolutions are generalizations of convolutions and are easier to apply in the spectral domain. Graph Convolutional Networks (GCN) which can use both - graph and node feature information. This python implementation is mostly inspired from a paper wiritten by Thomas N. Kipf and Max Welling. Paper

Spectral Clustering

The spectral clustering method is defined for general weighted graphs; it identifies K clusters using the eigenvectors of a matrix.

Constrained K-Means Clustering

K-means clustering implementation whereby a minimum and/or maximum size for each cluster can be specified.

This K-means implementation modifies the cluster assignment step (E in EM) by formulating it as a Minimum Cost Flow (MCF) linear network optimisation problem. This is then solved using a cost-scaling push-relabel algorithm and uses Google's Operations Research tools' SimpleMinCostFlow which is a fast C++ implementation.

Installation

You can install the graph-partition from PyPI:

pip install graph-partition

How to Use

Primarily there are three major algorithms are there

• Graph Convolutional Neural Network
• Spectral Clustering
• Constrained K-Means Clustering

Using of Graph Convolutional Network

import urllib.request
from scipy.spatial import distance_matrix
from graph_partition import *

# Artificial test Data
url = "https://cs.joensuu.fi/sipu/datasets/s1.txt"
data = urllib.request.urlopen(url)
ds = []
for line in data:
    ds.append([float(x) for x in line.strip().split()])

# Calculating the Const Matrix
cost_matrix = distance_matrix(ds[:50], ds[:50])

# Defining the GCN Model
gcn_model = GraphConvolutionNetwork(
    cost_matrix=cost_matrix, 
    num_class=2, 
    hidden_layers=10
    )
# GCN fit and predict
gcn_model.fit()

# Printing the cluster label
print(gcn_model.cluster_label)
# Printing the cluster evaluation metrics
print(gcn_model.evaluation_metric)

Using of Spectral Clustering

import urllib.request
from scipy.spatial import distance_matrix
from graph_partition import *

# Artificial test Data
url = "https://cs.joensuu.fi/sipu/datasets/s1.txt"
data = urllib.request.urlopen(url)
ds = []
for line in data:
    ds.append([float(x) for x in line.strip().split()])

# Calculating the Const Matrix
cost_matrix = distance_matrix(ds[:50], ds[:50])

# Defining Spectral Clustering Model
sc_model = SpectralClustering(cost_matrix=cost_matrix, num_class=2)

# Printing the cluster labels and evaluation metrics
print(sc_model.cluster_label)
print(sc_model.evaluation_metric)

Using of Constrained K-Means Clustering

import urllib.request
from graph_partition import *

# Artificial test Data
url = "https://cs.joensuu.fi/sipu/datasets/s1.txt"
data = urllib.request.urlopen(url)
ds = []
for line in data:
    ds.append([float(x) for x in line.strip().split()])

# Defining Spectral Clustering Model
k_means_model = ConstrainedKMeans(
    design_matrix=ds[:50], 
    num_class=2, 
    evaluate_metric=True
    )

# Printing the cluster labels and evaluation metrics
print(k_means_model.cluster_label)
print(k_means_model.evaluation_metric)

Support

For any queries please contact via email