GraphKB (Python)

build PyPi codecov PyPI - Downloads DOI

This repository is part of the platform for oncogenomic reporting and interpretation.

Python adapter package for querying the GraphKB API. See the user manual

Getting Started

Install (For developers)

clone this repository

git clone https://github.com/bcgsc/pori_graphkb_python
cd pori_graphkb_python

create a virtual environment

python3 -m venv venv
source venv/bin/activate

install the package and its development dependencies

pip install -U pip setuptools
pip install -e .[dev]

Run Tests

pytest tests

Generating the Documentation

User documentation for this repository is hosted in the central PORI repository

Deployment (Publishing)

Install the deployment dependencies

pip install .[deploy]

Build the distribution files

python setup.py install sdist bdist_wheel

Upload the distibutions to the package server (-r is defined in your pypirc)

twine upload -r bcgsc dist/*

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (1.15.0)

2 maintainers

PyPI data
Data sourced directly from PyPI's database.
Avatar for creisle from gravatar.com creisle Avatar for elewis_bcgsc from gravatar.com elewis_bcgsc

Credits

Author:

Requires

Python >=3.6

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

graphkb-1.9.0.tar.gz (35.2 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

graphkb-1.9.0-py3-none-any.whl (39.4 kB view details)

Uploaded Python 3

File details

Details for the file graphkb-1.9.0.tar.gz.

File metadata

  • Download URL: graphkb-1.9.0.tar.gz
  • Upload date:
  • Size: 35.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.11.2

File hashes

Hashes for graphkb-1.9.0.tar.gz
Algorithm Hash digest
SHA256 9119a4581125c06b6f2b6700f109c88c79e340f8178e0608decda930aa6388dd
MD5 28e5252bc394a127c4af47fb1c15a30e
BLAKE2b-256 ee0eaa6c33a0a05ea61656f3dfa10991a9292fd2e5996dadd715694d482e0b36

See more details on using hashes here.

File details

Details for the file graphkb-1.9.0-py3-none-any.whl.

File metadata

  • Download URL: graphkb-1.9.0-py3-none-any.whl
  • Upload date:
  • Size: 39.4 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.11.2

File hashes

Hashes for graphkb-1.9.0-py3-none-any.whl
Algorithm Hash digest
SHA256 0ad893e77cbf161a146e88924bcd1811357b675b70aab4e434540cc6dc2e581f
MD5 3219f00d876565aa4a701ad946186c30
BLAKE2b-256 7967e369c84c3794c353fe800e178459fce1ac45a25f99849955bd29ed055b8c

See more details on using hashes here.

Release history Release notifications | RSS feed

1.15.0

2 files

1.14.0

2 files

1.13.0

2 files

1.12.0

2 files

1.11.0

2 files

1.10.2

2 files

1.10.1

2 files

This release

1.9.0 This release

2 files

1.8.0

2 files

1.7.0

2 files

1.6.0

2 files

1.5.4

2 files

1.5.3

2 files

1.5.2

2 files

1.5.1

2 files

1.5.0

2 files

1.4.0

2 files

1.3.7

2 files

1.3.6

2 files

1.3.5

2 files

1.3.4

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page