grimoire
The grimoire pacakage contains libraries and scripts for Biological sequence analysis.
Disclaimer
The current developent is highly volatile and not ready for public consumption.
Design Considerations
The code is designed with the folllowing analyses in mind:
- Gene structure prediction using hidden Markov models and variants
- Genome annotation quality control
- Structure-function relationships in sequences (e.g. IME)
Programs
Program names are themed after spell names from the classic RPG "Wizardry: Proving Grounds of the Mad Overlord."
| Name | Meaning | Function |
|---|---|---|
| calfo | x-ray | genome annotation reporter |
| kandi | locate | genome annotation viewer |
| haman | change | genome slicer |
| milwa | light | hmm buider |
| dumapic | clarity | hmm grapher |
| halito | fire | basic hmm decoder |
| mahalito | big fire | 2-pass gene decoder |
| morlis | fear | annotation comparer (simple) |
| mogref | iron | sequence generator |
| mamorlis | great fear | (planned complex annotation comparer) |
| mahaman | change | (planned multi-genome slicer) |
| malor | apport | (planned genome lifter) |
| lahalito | torch | (planned full genome decoder) |
| tiltowait | explosion | (planned multi-genome decoder) |
| zilwan | dispel | (planned profile/alignment decoder) |
| latumapic | identify | (planned region-ifier) |
Contributors
- Ian Korf (iankorf)
- Hannah Lyman (hslyman)
- Alex Kramer (aklreaxmer)
- Qijia Liu (joyliu-q)
- Jack Yu (Angraygs)
Acknowledgements
Thanks to M. O. Trebor and E. W. Werdna for inspiration.
1 maintainer
Release files for grimoire 0.0.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| grimoire-0.0.2.tar.gz | 1.2 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| grimoire-0.0.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 1.3 MB
Release files / grimoire-0.0.2.tar.gz
| Download URL | grimoire-0.0.2.tar.gz |
|---|---|
| Size | 1.2 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.4
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Release files / grimoire-0.0.2-py3-none-any.whl
| Download URL | grimoire-0.0.2-py3-none-any.whl |
|---|---|
| Size | 28.6 kB |
| Tags | Python 3 |
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twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.4
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