Minimal toolkit for downloading the GTDB-Tk database to disk.
Project description
GTDB-Tk Database Download
Minimal toolkit for downloading the GTDB-Tk database to disk.
This is not the recommended way to download the GTDB-Tk reference database, please see here for the reccomended method.
This softare may be useful for users who are experiencing intermittent connection errors, or slow download speeds.
📚 Requirements
This software requires Python >=3.8 and makes use of the following packages:
⚙️ Installation
In a new virtual environment, or conda environment that is running Python >=3.8, simply run:
python -m pip install gtdbtk_db_download
🚀 Usage
For a complete list of options, run: gtdbtk_db_download --help
Example usage downloading to the /tmp/db
directory:
gtdbtk_db_download /tmp/db --threads 10
Example output
[2023-06-16 13:51:41] - gtdbtk_downloader v1.0.0
[2023-06-16 13:51:41] - Creating output directory.
[2023-06-16 13:51:41] - Loading R214 manifest
[2023-06-16 13:51:42] - Creating queue
[2023-06-16 13:51:42] - Downloading files
[2023-06-16 16:00:00] - Done.
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