A collection of handy tools for GWAS
Project description
Usage
Please check GWASLab document at https://cloufield.github.io/gwaslab/ .
Description
A collection of handy python scripts for GWAS.
Latest version :
Install
pip install gwaslab
What gwaslab can do
-
Sumstats Standardization, Normalization & Harmonization
-
Sumstats Quality control, Value conversion & Filtering
-
Visualization
- Manhattan plot
- Regional plot
- Effect comparison scatter plot
- Forest plot
-
Other Utilities
- Formatting
- Load ldsc file
- Get lead variant
- Check variants are novel or known
Project details
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