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A collection of handy tools for GWAS

Project description

gwaslab_logo

Usage

Please check GWASLab document at https://cloufield.github.io/gwaslab/ .

Description

A collection of handy python scripts for GWAS.

Latest version : gwaslab_badge

Install

pip install gwaslab

What gwaslab can do

  • Sumstats Standardization, Normalization & Harmonization

  • Sumstats Quality control, Value conversion & Filtering

  • Visualization

    • Manhattan plot
    image
    • Regional plot
    image
    • Effect comparison scatter plot
    image
    • Forest plot
    image
  • Other Utilities

    • Formatting
    • Load ldsc file
    • Get lead variant
    • Check variants are novel or known

Project details


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