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haplotype-based test for differentiation in multiple populations

Project description

hapflk is a software implementing the hapFLK [1] and FLK [2] tests for the detection of selection signatures based on multiple population genotyping data.

[1] Fariello et al., 2013, Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations. Genetics 193(3):929-941. http://www.genetics.org/content/193/3/929.abstract

[2] Bonhomme et al., 2010, Detecting selection in population trees: The Lewontin and Krakauer test extended. Genetics 186(1) 241-262 http://www.genetics.org/content/186/1/241.abstract

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