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harmonic minimization method for eliminating harmonic-driven connectivity with MEEG

Project description

HARMomic miNImization (Harmoni)

A tool for removing harmonic for MEEG connectivity

version Python linux macos windows

HARMONI

HARMONI is an open-source Python package for eliminating/suppressing the spurious phase synchronization due to the non-sinusoidal shape of the neuronal oscillations. It can be used in connectivity pipelines for investigating within- and cross-frequency phase synchronization with electrophysiological data.

Citation

Harmoni: a Novel Method for Eliminating Spurious Neuronal Interactions due to the Harmonic Components in Neuronal Data Mina Jamshidi Idaji, Juanli Zhang, Tilman Stephani, Guido Nolte, Klaus-Robert Mueller, Arno Villringer, Vadim V. Nikulin https://doi.org/10.1101/2021.10.06.463319

Installing

In order to install the latest version of HARMONI:

$ pip install -U harmoni

Dependencies

HARMONI is only dependent on Numpy and Scipy:

  • Python >= 3.6
  • NumPy >= 1.10
  • SciPy >= 0.1

Licensing

HARMONI is BSD-licenced (3 clause):

Copyright (c) 2021, Mina Jamshidi Idaji
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

1. Redistributions of source code must retain the above copyright notice, this
   list of conditions and the following disclaimer.

2. Redistributions in binary form must reproduce the above copyright notice,
   this list of conditions and the following disclaimer in the documentation
   and/or other materials provided with the distribution.

3. Neither the name of the copyright holder nor the names of its
   contributors may be used to endorse or promote products derived from
   this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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