hello-world-pycalrissian 0.0.6

A very simple Hello world app to submit a job using pycalrissian

simple-app-with-pycalrissian

A very simple Hello world app to submit a job using pycalrissian

To create mamba environment please execute this command:

mamba create -n hello_world_pycalrissian -c conda-forge python=3.8 tomli unidep twine
mamba activate hello_world_pycalrissian

To create a module using pyproject.toml with conda dependencies in a particular channel please execute the code below:

unidep install .    # this will create build folder

To create a module using pyproject.toml with PIP dependencies please execute the code below:

pip install .    # this will create build folder

Create a simple python app to submit a job using pycalrissian. The app will only print a very basic hello world.

How to create PYPI package:

You need to install some packages to create dist/* directory including .whl and .tar.gz files:

• Check the python and pip version by environment

## 
which python
which pip

• Update pip and install dist folder using the python specific version and build library: EX:

/home/t2/micromamba/envs/hello_world_pycalrissian/bin/python -m pip install --upgrade pip
/home/t2/micromamba/envs/hello_world_pycalrissian/bin/pip install twine build

• Create API token on PYPI account and configure it under $HOME/.pypirc file as below:

[pypi]
  username = __token__
  password = pypi-...

• Create dist folder:

/home/t2/micromamba/envs/hello_world_pycalrissian/bin/python -m build

Now you need to publish your application packages on PYPI:

twine upload dist/*

How to use the package in an isolated environment:

• Create an environment.yaml containing this contex:

name: hello_world_pycalrissian_env
channels:
  - conda-forge
  - terradue
dependencies:
  - python=3.8
  - click2cwl
  - pycalrissian
  - pip
  - pip:
    - hello-world-pycalrissian

Then you can easily import the moduleto your app.

How to use pycalrissian to submit a job:

sudo snap install microk8s --classic sudo usermod -a -G microk8s t2 sudo chown -R t2 ~/.kube newgrp microk8s microk8s status --wait-ready

microk8s enable dashboard microk8s enable dns microk8s enable registry microk8s enable istio