hesperos 0.1.18

A plugin to manually or semi-automatically segment medical data and correct previous segmentation data.

Hesperos plugin for Napari

TODO : DESCRIPTION

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Table of Contents

• Installation and Requirements
  • Automatic installation
  • Manual installation
• Use Hesperos plugin

Installation and Requirements

Hesperos plugin is designed to run on Windows or Macos with python 3.8, 3.9 or 3.10.

Automatic installation

1. Install [Anaconda] and deselect Add to PATH. Note the path where you install anaconda.
2. Download only the installation folder: [script_files]](/script_files)
3. Right click on the .bat files (for installation and running) and select Modify. Change the anaconda_dir to your anaconda path. Then save changes.

   for exemple: $ anaconda_dir=C:\Users\chgodard\anaconda3

4. Double click on the installation file to create a anaconda virtual environement with python 3.9 and napari 0.4.14
5. Double click on the running file to run napari from your virtual environment.
6. On Napari:
   1. Go to Plugins/Install Plugins...
   2. Search for "hesperos" (it can take a while to load).
   3. Install hesperos plugin.
   4. When installation is done, close Napari. A restart of Napari is needed to take in consideration the new installed plugin.
7. Double click on the running file to run napari.
8. Use the hesperos plugin in Plugins/hesperos

Manual installation

1. Install Anaconda and deselect Add to PATH. Note the path where you install anaconda.

2. Open your anaconda prompt command

3. Install python 3.8, 3.9 or 3.10

4. Install Python packages ( on conda virtual environment)

   $ conda install -c conda-forge napari=0.4.14

   $ pip install hesperos

5. Launch Napari

   $ napari

Use Hesperos plugin

TODO

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the BSD-3 license, "hesperos" is free and open source software

Anaconda