hetmatpy 0.1.0

Matrix implementations for hetnets and path-count-based measures

hetmatpy: a Python 3 package for matrix operations of hetnets

This codebase enables identifying the relevant network connections between a set of query nodes. The method is designed to operate on hetnets (networks with multiple node or relationship types).

This project is still under development. Use with caution.

Environment

Install via pip from GitHub using:

# install the latest release from PyPI
pip install hetmatpy

# install latest version on GitHub
pip install git+https://github.com/hetio/hetmatpy

# for local development, run the following inside the development environment:
pip install --editable .

Development

This repo uses pre-commit checks:

# run once per local repo before committing
pre-commit install

Acknowledgments

This work is supported through a research collaboration with Pfizer Worldwide Research and Development. This work is funded in part by the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative through Grants GBMF4552 to Casey Greene and GBMF4560 to Blair Sullivan.