Make HGNC queries for gene symbols
Project description
hgnc_queries.py
Query HGNC for gene symbols.
Created to attempt to rescue old gene symbols because of an old excel "database" that had to be converted in a Django database
Installation
pip install hgnc_queries
Examples:
Use HGNC api to get:
# Get new symbol
python hgnc_queries.py new_symbol $gene
# Get aliases of given symbol
python hgnc_queries.py alias $gene
# Get main symbol of alias
python hgnc_queries.py main_symbol $gene
# Get previous symbol
python hgnc_queries.py prev_symbol $gene
# Get genes starting with
python hgnc_queries.py gene $gene
# Get HGNC id of given symbol
python hgnc_queries.py id $gene
# Get symbol of given id
python hgnc_queries.py id2symbol $gene_id
Project details
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