SUBWAY

SUBmit jobs in your own WAY.

Install

• pip install hpcsubway

• python3 setup.py install

• or use directly by only export SUBWAY_PATH=/abs/dir/for/bin and export PATH=$SUBWAY_PATH:$PATH as well as export SUBWAY_PYTHON=python of your choice, default is python3.

Howto

Simple Slurm Example

Try:

mkdir demo && cd demo
subway debug setup rgd
subway run

Docs

pip install sphnix
cd docs
make html

The generated html docs are living in subway/docs/_build/html.

Or just check the online doc hosted in readthedocs.

Tests

pip install pytest
pytest
# or if you have slurm installed
pytest --slurm

You can also test full sets in docker if you don't have slurm configured

bash run-test.sh