SUBmit jobs in your own WAY
Project description
SUBWAY
SUBmit jobs in your own WAY.
Install
-
pip install hpcsubway
-
python3 setup.py install
-
or use directly by only
export SUBWAY_PATH=/abs/dir/for/bin
andexport PATH=$SUBWAY_PATH:$PATH
as well asexport SUBWAY_PYTHON=python of your choice
, default ispython3
.
Howto
Simple Slurm Example
Try:
mkdir demo && cd demo
subway debug setup rgd
subway run
Docs
pip install sphnix
cd docs
make html
The generated html docs are living in subway/docs/_build/html
.
Or just check the online doc hosted in readthedocs.
Tests
pip install pytest
pytest
# or if you have slurm installed
pytest --slurm
You can also test full sets in docker if you don't have slurm configured
bash run-test.sh
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