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Helper tools for use with hydra-genetics pipelines.

Project description

Tools

Python tool with helper functions for setting up new pipeline and preparing reference data

Lint and Test

python

Functions

  • create
  • reference

Example of how to generate a new project

 virtualenv -p python3.9 venv
 source venv/bin/activate
 pip install hydra-genetics
 hydra-genetics create-module -n snv -d "Collection of callers" -a "Patrik S" -e "p.s@mail.se" -g patrik -o snv
 hydra-genetics create-rule -n rule2 -m snv -a test2 -e "test@test"

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