IBL atlas module
Project description
iblatlas
This repository contains tools to manipulate 3D representations of the mouse brain anatomy for electrophysiolgy experiments. The tools are mainly using the the Allen Brain Atlas although some other atlases can be used and are written in Python.
One of the requirment of this repository is to use minimal requirements, based of standard matplotlib, numpy and scipy libraries, and excludes visualisation tool.
The documentation can be found here: https://int-brain-lab.github.io/iblenv/notebooks_external/atlas_working_with_ibllib_atlas.html
Installation
pip install iblatlas
Contributing
Changes are merged by pull requests. Release checklist:
- Update version in
iblatlas/__init__.py - Update
CHANGELOG.md - Create a pull request to the
mainbranch on GitHub
Once merged the package is uploaded to PyPI using GitHub Actions.
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