api of conriander slides, communicate with private cloud slides.
Project description
Project description
ic_slide is a sdk wrapper for coriander project of intemedic.it providers slide apis for python projects of internal company. It can not used for public domains.
Installing
Install and update using pip
:
pip install -U ic_slide
A Simple Example
sample of open-slide.
from ic_slide import open_slide
# open a slide with slide id.
slide_id = '4395d816-2832-e7b7-6472-39f9b9f93480'
slide_open_slide(slide_id)
# get metadata of slide.
metadata = slide._metadata
# get tile image (PIL.Image) of slide with x=0, y=0, width=512, height=512
tile = slide.read_region(0,0,512,512)
sample of enumerate tiles to a slide.
from ic_slide import enumerate_tiles
import numpy as np
# enumerate tiles from begin to stop with specified stride and size.
iterated_tiles = enumerate_tiles(np.array([0,0], np.array([8192,8192]), 400, np.array([512,512]))
for tile in iterated_tiles:
do_something(tile)
sample of enumerate slide indices of private cloud.
from ic_slide import enumerate_slide_indices
#enumerate all slide indices
slide_indices = enumerate_slide_indices()
for index in slide_indices:
print(index['Name'])
sample of enumerate distinct slide id of private cloud.
from ic_slide import enumerate_slide_distinct_slide_ids
slide_ids = enumerate_slide_indices()
for slide_id in slide_ids():
do_something(slide_id)
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