development_time_predict
Project description
development_time_predict
Install package:
pip install icmodel
Usage:
import icmodel
# Load data
test_data = sc.read_h5ad('DATA/PATH')
# Predict time
test_data = icmodel.Predict(test_data,pred='development time',NN=True,n=5)
# Predict celltype
test_data = icmodel.Predict(test_data,pred='cell type')
Build Docker image:
Install Docker:tutorial
cd development_time_predict
docker build -t time-predict:v1 .
# Successfully built xxxxxxxxx
# Successfully tagged time-predict:v1
docker run --name task_name -u $(id -u):$(id -g) -p $port:8888 -it -v /local/path:/home/jovyan/work time-predict:v1
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icmodel-0.0.1.tar.gz
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