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Interactive Electrode localization Utility

Project description

# Interactive Electrode Localization Utility (ielu) This is a GUI utility to assist in preprocessing tasks for electrocorticography (ecog) and stereo eeg (seeg) data analysis. It includes:

1. CT-to-MRI co-registration using Mutual Information (via Freesurfer) 1. Automatic electrode extraction and sorting into grids via pre-defined grid geometries 1. A GUI for manually tweaking electrode locations and grid information 1. Snapping electrode locations to a freesurfer cortical surface model 1. Exporting to montage files suitable for use in MNE-python

# Dependencies * A scientific python distribution such as anaconda or canopy * pysurfer * nibabel * mne-python * pymcubes

Note - you can easily install these dependencies with tools such as pip and easy-install.

# Quick start Simply clone this repository, then evoke the run script in the main folder. e.g., cd gselu; ./run

# More info For more information about this package and how it works, see the [wiki](https://github.com/aestrivex/ielu/wiki).

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