igann 0.1.1

Implementation of Interpretable Generalized Additive Neural Networks

IGANN - Interpretable Generalized Additive Neural Networks

--- This project is under active development ---

IGANN is a novel machine learning model from the family of generalized additive models (GAMs). This GAM is special in the sense that it uses a combination of extreme learning machines and gradient boosting.

Some of the main features are:

• Training is very fast and can be performed on CPU and GPU
• The rate of change of so-called shape functions can be influenced through hyperparameter ELM_scale
• The initial model is simply linear, thus IGANN generally also performs well on small datasets

Main developers of this project are:

Mathias Kraus, FAU Erlangen-Nürnberg
Daniel Tschernutter, ETH Zurich
Sven Weinzierl, FAU Erlangen-Nürnberg
Patrick Zschech, FAU Erlangen-Nürnberg
Nico Hambauer, FAU Erlangen-Nürnberg
Sven Kruschel, FAU Erlangen-Nürnberg
Lasse Bohlen, FAU Erlangen-Nürnberg
Julian Rosenberger, FAU Erlangen-Nürnberg
Theodor Stöcker, FAU Erlangen-Nürnberg

Dependencies

The project depends on PyTorch and abess (version 0.4.5).

Usage

IGANN can in general be used similar to sklearn models. The methods to interact with IGANN are the following:

• .fit(X, y) for training IGANN on (X, y) dataset. Categorical variables are derived based on their dtypes. That's why the feature marix X needs to be a pandas DataFrame.
• .predict_raw(X) to compute simple prediction for regression or raw logits for classification tasks. Per default values greater than 0 could be interpreted as belonging to class 1 and values smaller than 0 as belonging to class -1.
• .predict(X) to compute simple prediction for regression or class prediction in {-1, 1} for classification tasks. If the IGANN parameter optimize_threshold is set to True, the threshold for the class prediction is optimized on the training data and hence deviates from the decision boundary of 0.
• .predict_proba(X) to compute probability estimates
• .plot_single() to show shape functions
• .plot_learning() to show the learning curve on train and validation set

Parameters

When initializing IGANN, the following parameters can be set:

• task: defines the task, can be 'regression' or 'classification'
• n_hid: the number of hidden neurons for one feature
• n_estimators: the maximum number of estimators (ELMs) to be fitted.
• boost_rate: Boosting rate.
• init_reg: the initial regularization strength for the linear model.
• elm_scale: the scale of the random weights in the elm model.
• elm_alpha: the regularization strength for the ridge regression in the ELM model.
• sparse: Tells if IGANN should be sparse or not. Integer denotes the max number of used features
• act: the activation function in the ELM model. Can be 'elu', 'relu' or a torch activation function.
• early_stopping: we use early stopping which means that we don't continue training more ELM. This parameter sets the patience
• models, if there has been no improvements for 'early_stopping' number of iterations.
• device: the device on which the model is optimized. Can be 'cpu' or 'cuda'
• random_state: random seed.
• optimize_threshold: if True, the threshold for the classification is optimized using train data only and using the ROC curve. Otherwise, per default the raw logit value greater 0 means class 1 and less 0 means class -1.
• verbose: verbosity level. Can be 0 for no information, 1 for printing losses, and 2 for plotting shape functions every 5 iterations.

Examples

Basic regression example

In the following, we use the common diabetes dataset from sklearn (https://scikit-learn.org/0.16/modules/generated/sklearn.datasets.load_diabetes.html). After loading the dataset via

X, y = load_diabetes(return_X_y=True, as_frame=True)
scaler = StandardScaler()
X_names = X.columns

X = scaler.fit_transform(X)
X = pd.DataFrame(X, columns=X_names)
X['sex'] = X.sex.apply(lambda x: 'w' if x > 0 else 'm')

and !important scale the target values

y = (y - y.mean()) / y.std()

we can simply initialize and fit IGANN with

from igann import IGANN
model = IGANN(task='regression')
model.fit(X, y)

With

model.plot_single(plot_by_list=['age', 'bmi', 'bp', 'sex', 's1', 's2'])

we obtain the following shape functions

Sparse regression example

In many cases, it makes sense to train a sparse IGANN model, i.e., a model which only basis its output on few features. This generally increases the ease of understanding the model behavior.

from igann import IGANN
model = IGANN(task='regression', sparse=5)
model.fit(X, y)
model.plot_single()

yields (note that the sparse parameters denotes the max number of features)

Citations

@article{kraus2023interpretable,
  title={Interpretable Generalized Additive Neural Networks},
  author={Kraus, Mathias and Tschernutter, Daniel and Weinzierl, Sven and Zschech, Patrick},
  journal={European Journal of Operational Research},
  year={2023},
  publisher={Elsevier}
}