Analyze antibody repertoires and discover new V genes
Project description
IgDiscover
IgDiscover analyzes antibody repertoires and discovers new V genes from high-throughput sequencing reads. Heavy chains, kappa and lambda light chains are supported (to discover VH, VK and VL genes).
IgDiscover is the result of a collaboration between the Gunilla Karlsson Hedestam group at the Department of Microbiology, Tumor and Cell Biology at Karolinska Institutet, Sweden and the Bioinformatics Long-Term Support facility at Science for Life Laboratory (SciLifeLab), Sweden.
If you use IgDiscover, please cite:
Corcoran, Martin M. and Phad, Ganesh E. and Bernat, Néstor Vázquez and Stahl-Hennig, Christiane and Sumida, Noriyuki and Persson, Mats A.A. and Martin, Marcel and Karlsson Hedestam, Gunilla B.Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity.Nature Communications 7:13642 (2016)
Links
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
igdiscover-0.12.2.tar.gz
(247.2 kB
view hashes)
Built Distribution
igdiscover-0.12.2-py3-none-any.whl
(111.1 kB
view hashes)
Close
Hashes for igdiscover-0.12.2-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 5783cca0f3039e04e8e7c4e624f7f8270f721b3f7f002ea7c04c612ebfd76e25 |
|
MD5 | 1125af684ee9aee49356e3d9c17a77a4 |
|
BLAKE2b-256 | 5ebe27e493fba4f7c828bc2ebb9e8a10fd17c0d79e688ff60ac21c8d8355c839 |