Skip to main content

Influence graph analysis, consistency check, repair and prediction

Project description

Installation

You can install iggy by running:

$ pip install --user iggy

The executable scripts can then be found in ~/.local/bin.

Usage

Typical usage is:

$ iggy.py network.sif observation.obs --show_colorings 10

For more options you can ask for help as follows:

$ iggy.py -h
usage: iggy.py [-h] [--autoinputs] [--scenfit] [--show_colorings SHOW_COLORINGS] [--show_predictions] networkfile observationfile

positional arguments:
  networkfile           influence graph in SIF format
  observationfile       observations in bioquali format

optional arguments:
  -h, --help            show this help message and exit
  --autoinputs          compute possible inputs of the network (nodes with
                        indegree 0)
  --scenfit             compute scenfit of the data, default is mcos
  --show_colorings SHOW_COLORINGS
                        number of colorings to print, default is OFF, 0=all
  --show_predictions    show predictions

The second script contained is opt_graph.py Typical usage is:

$ opt_graph.py network.sif observations_dir/ --show_repairs 10

For more options you can ask for help as follows:

$ opt_graph.py -h
usage: opt_graph.py [-h] [--autoinputs] [--show_repairs SHOW_REPAIRS] [--opt_graph] networkfile observationfiles

positional arguments:
  networkfile           influence graph in SIF format
  observationfiles      directory of observations in bioquali format

optional arguments:
  -h, --help            show this help message and exit
  --autoinputs          compute possible inputs of the network (nodes with
                        indegree 0)
  --show_repairs SHOW_REPAIRS
                        number of repairs to show, default is OFF, 0=all
  --opt_graph           compute opt-graph repairs (allows also adding edges),
                        default is only removing edges

Samples

Sample files available here:: iggy_demo_data.tar.gz

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

iggy-0.1.tar.gz (300.4 kB view hashes)

Uploaded source

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page