Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive.
Project description
igsr_archive
Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive: ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/
Basic functionality that this repo provides is:
- adding files on the FTP
- moving files on the FTP
- dearchiving files from the FTP
- updating records in the FTP
- Recording FTP changes in our tracking database
Installation
-
Use pip for installing:
pip install igsr-archive
And you are ready to go!
Documentation
Go to https://igsr-archive.readthedocs.io/en/latest/
Indexing scripts
The docs on how to generate the different index files we use in our project can be found here
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