Skip to main content

Package for handling IHM mmCIF and BinaryCIF files

Project description

DOI docs conda package pypi package Linux Build Status Windows Build Status codecov

This is a Python package to assist in handling mmCIF and BinaryCIF files compliant with the integrative/hybrid modeling (IHM) extension. It works with Python 2.7 or Python 3.

Please see the documentation or some worked examples for more details.

Installation with conda or pip

If you are using Anaconda Python, install with

conda install -c conda-forge ihm

Alternatively, install with pip:

pip install ihm

(Note that pip builds a C extension module for faster parsing of mmCIF files. This requires that your system has a C compiler. If you don't want to build the C extension module, install with pip install ihm --install-option="--without-ext".)

Installation from source code

To build and install from a clone of the GitHub repository, run

python setup.py build
python setup.py install

Note that a C extension module is built for faster parsing of mmCIF files. This requires that your system has a C compiler and SWIG. If either of these components are missing, you can choose to build without the extension by adding --without-ext to both setup.py command lines above.

If you want to read or write BinaryCIF files, you will also need the Python msgpack package.

Testing

There are a number of testcases in the test directory. Each one can be run like a normal Python script to test the library. They can also be all run at once using nose or pytest. They will also test the C extension module if it is first built with python setup.py build_ext --inplace.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for ihm, version 0.26
Filename, size File type Python version Upload date Hashes
Filename, size ihm-0.26.tar.gz (274.8 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page