iKISS is a pipeline to detect kmers under selection.
Project description
iKISS (Kmer Inference Selection and Structure) is a snakemake reference-Free pipeline for inferring diversity, structuration, selection and genotype-phenotype association.
iKISS uses KmersGWAS, PCADAPT and LFMM to select genomics regions under selection.
IKISS also proposes study the populations structure using kmers and the SNMF package
Documentation
Online documentation is on ReadTheDocs.
Authors
Julie Orjuela (UMR DIADE - IRD)
Yves Vigouroux (UMR DIADE - IRD)
Licence
Licensed under GNU GENERAL PUBLIC LICENSE V3.
Intellectual property belongs to IRD and authors.
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