Tools to handle Fluidigm IMC data

These details have not been verified by PyPI

Project links

Project description

imctools

PyPI PyPI - Python Version PyPI - License GitHub Workflow Status (branch)

An IMC file conversion tool that aims to convert IMC raw data files (.mcd, .txt) into an intermediary ome.tiff, containing all the relevant metadata. Further it contains tools to generate simpler TIFF files that can be directly be used as input files for e.g. CellProfiller, Ilastik, Fiji etc.

Documentation is available at https://bodenmillergroup.github.io/imctools

Requirements

This package requires Python 3.7 or later.

Using virtual environments is strongly recommended.

Installation

Install imctools and its dependencies with:

pip install imctools

Usage

See Quickstart

Authors

Created and maintained by Vito Zanotelli vito.zanotelli@uzh.ch and Anton Rau anton.rau@uzh.ch

Contributing

Changelog

License

MIT

Project details

These details have not been verified by PyPI

Project links

Release history Release notifications | RSS feed

This version

2.1.8

Sep 12, 2021

2.1.7

May 21, 2021

2.1.6

Mar 17, 2021

2.1.5

Mar 3, 2021

2.1.4

Feb 1, 2021

2.1.3

Jan 21, 2021

2.1.2

Jan 21, 2021

2.1.1

Jan 21, 2021

2.1.0

Oct 14, 2020

1.0.8

Aug 5, 2020

1.0.7

Mar 19, 2020

1.0.6

Feb 5, 2020

1.0.5

Dec 18, 2019

1.0.4

Nov 21, 2019

1.0.3

Jul 1, 2019

1.0.2

Jul 1, 2019

1.0.1

Jun 28, 2019

1.0.0

Jun 27, 2019

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

imctools-2.1.8.tar.gz (27.5 kB view details)

Uploaded Sep 12, 2021 Source

Built Distribution

imctools-2.1.8-py3-none-any.whl (41.4 kB view details)

Uploaded Sep 12, 2021 Python 3

File details

Details for the file imctools-2.1.8.tar.gz.

File metadata

Download URL: imctools-2.1.8.tar.gz
Upload date: Sep 12, 2021
Size: 27.5 kB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: poetry/1.1.6 CPython/3.8.10 Linux/5.11.0-34-generic

File hashes

Hashes for imctools-2.1.8.tar.gz
Algorithm	Hash digest
SHA256	`add04970a8bc2565349cd4e9159e6fca43cfc85e98d70ae1d38a0c14653c580d`
MD5	`9a916e909b1aecebf2b433005943e6c3`
BLAKE2b-256	`d05be24b46a2158a6c91137d110b833a83c4f11292746252d0ee89913d2f6c7b`

See more details on using hashes here.

File details

Details for the file imctools-2.1.8-py3-none-any.whl.

File metadata

Download URL: imctools-2.1.8-py3-none-any.whl
Upload date: Sep 12, 2021
Size: 41.4 kB
Tags: Python 3
Uploaded using Trusted Publishing? No
Uploaded via: poetry/1.1.6 CPython/3.8.10 Linux/5.11.0-34-generic

File hashes

Hashes for imctools-2.1.8-py3-none-any.whl
Algorithm	Hash digest
SHA256	`e247e86c74fd7cce260d19f55f6beab1088038cb4f6e49e5eb9b518aa79db578`
MD5	`f4cc865ac192bf175ce6010e761dc182`
BLAKE2b-256	`9d686883aa3f051e961019495c234ef73e40c5983c6a4d5999b9ce33ffc61a8d`