Examples for imglyb.
Project description
imglyb-examples
This is a repository of examples for imglyb.
Dependencies
All dependencies will be installed automatically when installing imglyb-examples
through conda.
imglyb is available on conda or you can install it manually following the build instructions. All other depdendencies are available through your package manager, pip
, or various anaconda channels.
Install
Manual
First, make sure that all dependencies are installed, then run
python setup.py install
Conda
conda install -c hanslovsky imglyb-examples
If imglyb
was not previously installed, re-source the current conda environment after installing to set the environment properly.
Run
These examples are available.
# bash
# Basic visualization and application of Python and ImgLib2 filters
python -m imglyb_examples.butterfly
# Python implemented overlays for BigDataViewer
python -m imglyb_examples.bdv_hello_world
# Python implementation of a painting tool for BigDataViewer
python -m imglyb_examples.bdv_painter
# Embed BigDataViewer in Qt application (only Linux, and Qt and python-xlib dependencies)
python -m imglyb_examples.qt_awt
# Basic visualization of series of 2D NumPy arrays
python -m imglyb_examples.views_stack
I recommend starting your own code from these examples and extend as you need. On Linux and Windows you can run these commands like this, as well:
imglyb-examples.butterfly
imglyb-examples.bdv-hello-world
imglyb-examples.bdv-painter
mglyb-examples.qt-awt
imglyb-examples.views-stack
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