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Loading and saving of image data.

Project description

Python Version PyPI Downloads Wheel Development Status Tests codecovCode style: black Contributions

imio

Loading and saving of image data.

About

The aim of imio is to be a lightweight image loading library for the file types supported by cellfinder, and brainreg.

Supports loading of:

  • Tiff stack +
  • Tiff series (from a directory, a text file or a list of file paths). *+
  • nrrd
  • nifti (.nii & .nii.gz)

* Supports loading in parallel for speed

+ Suports scaling on loading. E.g. downsampling to load images bigger than the available RAM

Supports saving of:

  • Tiff stack
  • Tiff series
  • nifti

To install

pip install imio

Contributing

Contributions to imio are more than welcome. Please see the developers guide.

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