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A pipeline for integrative analysis for scTCR- and scRNA-seq data

Project description

Integrative analysis for single-cell RNA sequencing and single-cell TCR sequencing data


immunopipe is a pipeline based on pipen framework. It includes a set of processes for scTCR- and scRNA-seq data analysis in R, python and bash. The pipeline is designed to be flexible and configurable.

immunopipe

Documentaion

https://pwwang.github.io/immunopipe

Proposing more analyses

If you have any suggestions for more analyses, please feel free to open an issue here

Example

https://github.com/pwwang/immunopipe-example

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