Skip to main content

A pipeline for integrative analysis for scTCR- and scRNA-seq data

Project description

Integrative analysis for single-cell RNA sequencing and single-cell TCR sequencing data


immunopipe is a pipeline based on pipen framework. It includes a set of processes for scTCR- and scRNA-seq data analysis in R, python and bash. The pipeline is designed to be flexible and configurable.

immunopipe

Documentaion

https://pwwang.github.io/immunopipe

Proposing more analyses

If you have any suggestions for more analyses, please feel free to open an issue here

Example

https://github.com/pwwang/immunopipe-example

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

immunopipe-0.9.2.tar.gz (26.9 kB view details)

Uploaded Source

Built Distribution

immunopipe-0.9.2-py3-none-any.whl (29.9 kB view details)

Uploaded Python 3

File details

Details for the file immunopipe-0.9.2.tar.gz.

File metadata

  • Download URL: immunopipe-0.9.2.tar.gz
  • Upload date:
  • Size: 26.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.6.1 CPython/3.9.18 Linux/6.2.0-1015-azure

File hashes

Hashes for immunopipe-0.9.2.tar.gz
Algorithm Hash digest
SHA256 effa22144496c8548bf322637731d7332128e3f99e54174442144b2d34f6d937
MD5 16d804a60d9b435bda894dae3e5c335d
BLAKE2b-256 df67eb0a3324e2aa113cb2b930c02dd81d53a6ff51cb82faa0ef39dd35d83788

See more details on using hashes here.

Provenance

File details

Details for the file immunopipe-0.9.2-py3-none-any.whl.

File metadata

  • Download URL: immunopipe-0.9.2-py3-none-any.whl
  • Upload date:
  • Size: 29.9 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.6.1 CPython/3.9.18 Linux/6.2.0-1015-azure

File hashes

Hashes for immunopipe-0.9.2-py3-none-any.whl
Algorithm Hash digest
SHA256 bbd154daa9c743800ce030d46d3151303d21b1199cc90c9d418fc60176ed9ae1
MD5 edb33e2ea231078b841ea83e2d7798f4
BLAKE2b-256 89487375df7517e3163743e46a4e86b1584cd241b21e25d67a638692ab0e68d5

See more details on using hashes here.

Provenance

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page