impose 0.0.6

Fit and superimpose structures from different imaging modalities

Align microscopy images using custom-defined structural patterns and superimpose the resulting pattern distributions with data from other imaging modalities.

Documentation

There is no documentation yet.

Installation

These are installation instructions for macOS, but are similar on other platforms.

First, make sure that you have installed Python 3. Open the Terminal App and run the following command. The Python version should be printed to the terminal.

python3 -V
# Python 3.9.0

The releases of impose are managed via tags. The continuous integration service (CI) on GitLab creates an installable Python package for each tag (e.g. impose-0.1.0-py3-none-any.whl). To get the latest release, browse to the CI/Jobs page. Find the line with the latest tag (the line that does not contain “master” in the “Job” column). And click on the download icon in the last column of that line. Unpack the “artifacts.zip” file in your “Downloads” folder.

To install the Python package “impose”, run the following command in the Terminal App:

python3 -m pip install ~/Downloads/dist/impose-0.1.0-py3-none-any.whl

This implies that the impose-0.1.0-py3-none-any.whl file (note the version number in the file name, which you probably have to change) is present in the “dist” directory under “Downloads”.

Starting impose

Once you have installed impose via the method described above, you can start it from the Terminal app:

python3 -m impose