This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
Latest Version Dependencies status unknown Test status unknown Test coverage unknown
Project Description

Installation

You can install ingranalyze by running:

$ pip install --user ingranalyze

On Linux the executable script can then be found in ~/.local/bin

and on MacOS the script is under /Users/YOURUSERNAME/Library/Python/2.7/bin.

Usage

Typical usage is:

$ ingranalyze.py --mics --repair 5 networkfile observationfile

For more options you can ask for help as follows:

$ ingranalyze.py -h
        usage: ingranalyze.py [-h] [--mics] [--repair {1,2,3,4,5}] [--list_repairs] networkfile observationfile

        positional arguments:
          networkfile           influence graph in bioquali format
          observationfile       observations in bioquali format

        optional arguments:
          -h, --help            show this help message and exit
          --mics                compute minimal inconsistent cores
          --repair {1,2,3,4,5}  choose repair method: 1 flip observed variations, 2
                                flip influences, 3 define network nodes as inputs, 4
                                define network nodes as input in an experiment (use
                                only in case of multiple experiments), 5 add
                                influences. default is 3
          --list_repairs        compute all minimal repair sets

Samples

Sample files for yeast are available here: yeast_guelzim.net yeast_snf2.obs

Release History

Release History

1.5.3

This version

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1.5.2

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1.5.1

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1.5

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1.4

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1.3

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1.2

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1.1

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1.0dev

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Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
ingranalyze-1.5.3.tar.gz (13.9 kB) Copy SHA256 Checksum SHA256 Source Jun 2, 2014

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