Influence graph analysis, consistency check, diagnosis, repair and prediction.
Project description
Installation
You can install ingranalyze by running:
$ pip install --user ingranalyze
On Linux the executable script can then be found in ~/.local/bin
and on MacOS the script is under /Users/YOURUSERNAME/Library/Python/2.7/bin.
Usage
Typical usage is:
$ ingranalyze.py --mics --repair 5 networkfile observationfile
For more options you can ask for help as follows:
$ ingranalyze.py -h usage: ingranalyze.py [-h] [--mics] [--repair {1,2,3,4,5}] [--list_repairs] networkfile observationfile positional arguments: networkfile influence graph in bioquali format observationfile observations in bioquali format optional arguments: -h, --help show this help message and exit --mics compute minimal inconsistent cores --repair {1,2,3,4,5} choose repair method: 1 flip observed variations, 2 flip influences, 3 define network nodes as inputs, 4 define network nodes as input in an experiment (use only in case of multiple experiments), 5 add influences. default is 3 --list_repairs compute all minimal repair sets
Samples
Sample files for yeast are available here: yeast_guelzim.net yeast_snf2.obs
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
ingranalyze-1.5.3.tar.gz
(13.9 kB
view hashes)