Simulator of complex structural variants in genomes
Project description
insilicoSV: a framework for structural variant simulation
Overview
TODO
Installation
Prerequisite: Python 3.8 and up - Install
Installation using pip:
$ pip install insilicosv
To Run
insilicosv <reference_fasta> <config_yml> <output_prefix>
Documentation
For documentation outlining the different features of insilicoSV along with usage examples and data resources, please refer to the wiki:
- Input guidelines
- Example Use Cases
- SV Grammar
- Benchmark Genomes
- Additional Utilities
- Example SV Visualizations
Authors
Chris Rohlicek - crohlice@broadinstitute.org
Nick Jiang - nickj@berkeley.edu
Ilya Shlyakhter - ilya@broadinstitute.org
Victoria Popic - vpopic@broadinstitute.org
Project details
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