Skip to main content

Simulator of complex structural variants in genomes

Project description

insilicoSV: a framework for structural variant simulation

Overview

TODO

Installation

Prerequisite: Python 3.8 and up - Install

Installation using pip:

  • $ pip install insilicosv

To Run

insilicosv <reference_fasta> <config_yml> <output_prefix>

Documentation

For documentation outlining the different features of insilicoSV along with usage examples and data resources, please refer to the wiki:

Authors

Chris Rohlicek - crohlice@broadinstitute.org

Nick Jiang - nickj@berkeley.edu

Ilya Shlyakhter - ilya@broadinstitute.org

Victoria Popic - vpopic@broadinstitute.org

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

insilicosv-0.0.5.tar.gz (39.8 kB view hashes)

Uploaded Source

Built Distribution

insilicosv-0.0.5-py3-none-any.whl (28.2 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page