IOCBio Kinetics
Project description
Kinetics analysis program
IOCBIO Kinetics is a cross-platform application for analysis of different traces, as described by its plugins. While originally developed for analysis of enzyme kinetics, the other types of traces can be analyzed as well. It is designed to analyze traces where some measured parameter depends on one other parameter, such as time or space. For example, respiration rate measurements via following oxygen concentration in time and its changes through addition of metabolites.
The analysis of experimental traces is built as a pipeline, with the data imported from the experiment file, regions of interest automatically generated or set by user, data fitted and analyzed. Communication between different plugins is done through the database backend with the analysis results stored in the database. Software is modular with the new modules added easily to fit the new types of experiments.
- User documenation: https://iocbio.gitlab.io/kinetics
- Issues: https://gitlab.com/iocbio/kinetics/issues
Included third-party software
Distribution includes records.py with the patches applied to fix issues that have not been merged upstream. Records license is available at LICENSE-records.
Copyright
Copyright (C) 2018-2020 Laboratory of Systems Biology, Department of Cybernetics, School of Science, Tallinn University of Technology (https://sysbio.ioc.ee).
Software license: GPLv3, see LICENSE.
Contact: Marko Vendelin markov@sysbio.ioc.ee
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