IPTK is a Pythonic library specialized in the analysis of HLA-peptidomes identified through an Immunopeptiomics pipeline.
Project description
The immunopeptidomic toolkit library, IPTK
Introduction and Project Aim
IPTK is a Pythonic library specialized in the analysis of HLA-peptidomes identified through an Immunopeptiomics pipeline. The library provides a high level API for analyzing and visualizing the identified peptides, integrating transcritomics and protein structure information for a rich analysis and for comparing different experiments and different runs.
Tutorials
The library have three notebooks that provide a step be step guidance to use the library and to utilize its major APIs for interacting with an IPs data. These Tutorial can be found at the Tutorial directory
IPTK have be documented using Sphnix, the manual of the library can be found at docs directory and online @readthedocs[will be added after submission]
Installation
The library can be installed using pip as follow:
pip install TBD
Funding
The project was funded by the German Research Foundation (DFG) (Research Training Group 1743, ‘Genes, Environment and Inflammation’)
Project details
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