issfile 2023.2.0

Open ISS files.

issfile

Library for opening ISS files and their conversion to tiff.

Installation

pip install issfile

Converting .iss-pt files to .tiff files

iss2tiff --help

iss2tiff file.iss-pt

this will create file.tif and file.carpet.tif containing images and carpets respectively. Metadata is also saved in the tiffs in the description tag. A pdf with some plots is created too.

Use as a library

from matplotlib import pyplot as plt
from issfile import IssFile

with IssFile(file) as iss:
    image = iss.get_image(c=1, t=5)
    carpet, (time, x, y, z) = iss.get_carpet(c=1, t=5)

    plt.figure()
    plt.imshow(image)
    plt.figure()
    plt.plot(carpet.sum(1))