TotalVariation algorithms, providing a wrap for the external project: https://github.com/albarji/proxTV
Project description
Overview
TotalVariation algorithms. itkProxTVImageFilter provides a wrap for the external project proxTV: https://github.com/albarji/proxTV
ITK provides wrapping for Windows, macOS and Linux:
import itk
Dimension = 3
I = itk.Image[itk.F, Dimension]
reader = itk.ImageFileReader[I].New(FileName=file_name)
reader.Update()
image = reader.GetOutput()
tv = itk.ProxTVImageFilter[I, I].New()
tv.SetInput(image)
tv.SetMaximumNumberOfIterations(10)
tv.SetWeights(100)
tv.Update()
output_file_name="/tmp/tvout.nrrd"
itk.imwrite(tv.GetOutput(), output_file_name)
Examples of 3D image denoised
Original:
TotalVariation denoised:
Original:
Denoised:
Installation
To install the binary Python packages:
python -m pip install itk-totalvariation
Since ITK 5.0.0, this module is available in the ITK source tree as a remote module. To enable it, set:
Module_TotalVariation:BOOL=ON
in ITK’s CMake build configuration.
License
This software is distributed under the Apache 2.0 license. Please see the LICENSE file for details.
Project details
Download files
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Source Distributions
Built Distributions
Hashes for itk_totalvariation-1.0.1-cp311-abi3-win_amd64.whl
Algorithm | Hash digest | |
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SHA256 | bac30c28ac0afdea0c112f7ea3619f9fe8d231efb19c91ef09869cecaa3ae125 |
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MD5 | e40ea7167856cce4cc3f2de90293cdc2 |
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BLAKE2b-256 | 4fa3680cee5d9411d5ef5c6ddcce8797de082ce8aded027c558866927b234b71 |
Hashes for itk_totalvariation-1.0.1-cp311-abi3-manylinux_2_28_x86_64.whl
Algorithm | Hash digest | |
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SHA256 | c077f15cc66001ef751390586d9e410ee55b52d4db55975149bfb740f9c6e4ea |
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MD5 | 3d4befd9a5238553c59589c1e7c4797a |
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BLAKE2b-256 | a0e39dd16e817e756bda4e3ed3c43ec7e8baeba7643ce000c4868a6001859aa6 |
Hashes for itk_totalvariation-1.0.1-cp311-abi3-manylinux_2_28_aarch64.whl
Algorithm | Hash digest | |
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SHA256 | 985916efc43c8aa932e3b7798176d5de3ad7ea2ade4d19a85abd5a7023483209 |
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MD5 | 8eec1c2e009e157371c8706733028a0c |
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BLAKE2b-256 | be4da1ca7e1cca55c8bf86a759da94d86b69c4de14efb542ea802e25e45d8416 |
Hashes for itk_totalvariation-1.0.1-cp311-abi3-manylinux_2_17_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | c4b9a95bf0eff948489aec5546377ae17b587eab4014b6b9af1a3d0056a155a9 |
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MD5 | 622d3a0de0a773a226a37a6a342b4afa |
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BLAKE2b-256 | 1b4bd6c2b8d814f1b6397fcc6f5ac750e4b5e8eabd4d166b7e80eb003d73c505 |
Hashes for itk_totalvariation-1.0.1-cp311-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 343305a53f64378f17a53831314aea543e4397cd12e3698a469f79ca0521456c |
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MD5 | 1ec7f028585baa49b6c806f74da5d34d |
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BLAKE2b-256 | 7d9a8e78635345f9120281b718b99f27a631c887bbd22cbffa6dffd1d2ed5dd9 |
Hashes for itk_totalvariation-1.0.1-cp311-abi3-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
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SHA256 | af92558147d4e4dc8e7a5910ac26d688f75d5aa43789f3424254e276f75ed3d2 |
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MD5 | 412b28640fb80fba3d0e015b652e79e7 |
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BLAKE2b-256 | 804c94c6832e22997204b7b03569237c41e90d785fb82d7c8a708092b13ca46f |
Hashes for itk_totalvariation-1.0.1-cp311-abi3-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 469b4b610b5f332b722eb58caa245a43bb1e7777916800bacdc90d4b32acc91c |
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MD5 | e972f4fddeae921cf1ee7673cc9c16d5 |
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BLAKE2b-256 | b43fb8d7daf263b7ea9f7501e6c7e0dbba5beaa97352a0e41aa1880a9cbbb966 |
Hashes for itk_totalvariation-1.0.1-cp310-cp310-win_amd64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 8f0891e69b577fa3a74688066813c6185fb6bc8fdb23449b63eced9c60872777 |
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MD5 | 81ba0a4c2f66a72541d0e88db0cb2049 |
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BLAKE2b-256 | ecd4aec9b9f607352b84782b555da9311611b58fecd1a9d8d01f2d3ad05f11c2 |
Hashes for itk_totalvariation-1.0.1-cp310-cp310-manylinux_2_28_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 2f2bab0c3ce66ce3335bcd0efa1d4ef0563b78ee6b426f4649c0daeca1e9ca07 |
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MD5 | 8548fd8ce331c4a5681262057c995af6 |
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BLAKE2b-256 | 5402a1fc1d63039a8a48ee643c8c6ed4af654d74642d1c61ce6e28ef69eeb0b4 |
Hashes for itk_totalvariation-1.0.1-cp310-cp310-manylinux_2_28_aarch64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6d81a1459707f8e8661dd893a308b39579232eee3469bc78af8b923526ab9da3 |
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MD5 | 499274ada7139ceb7b199fcf0c81be8d |
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BLAKE2b-256 | a433cbd873f39b3b133aa81f8e194fb8c5e96bae48f927a6229920b36d6b725b |
Hashes for itk_totalvariation-1.0.1-cp310-cp310-manylinux_2_17_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 5a5604626ce264d13185fe667bcabc0c8fcbc6e0e47f49a1edb2df95187f6fa0 |
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MD5 | 07de5c70b4513e0fac1cb46c50d3ee8b |
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BLAKE2b-256 | 7bbd95c751c09a63f32b0fb8bdcc52ab3c6c0bb206e4f01a8b60540780aa1208 |
Hashes for itk_totalvariation-1.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 05f1a47175bef398705b0b569ec7315735656336082ace17f3ae1c94adfd52f4 |
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MD5 | dca5a9c63a376386c3415151514e3beb |
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BLAKE2b-256 | 15b9fe2b5d488fbeb1bc6833152b397bacaf55bf8042032e8740472ac76336cb |
Hashes for itk_totalvariation-1.0.1-cp310-cp310-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b3869ddb7a4106eeedbaeb640f161fc382cad2c6173e9538ef5a117778727729 |
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MD5 | 14d1f7d38c79ba3f576d93394bbb2cfd |
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BLAKE2b-256 | db47220060adec4bfc2078152890ae43216b3396bb8f139cd09e39b780ac5810 |
Hashes for itk_totalvariation-1.0.1-cp310-cp310-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9611e809562cc30a1a888479578b27cb733b23649da8c01fa212af2c17da9e52 |
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MD5 | add8d7cec6a70312a296a6c2c17c4401 |
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BLAKE2b-256 | 97d228c23a719a8b5eb46cf52bee27b98a1b5a6ddcd6bd981a3c64042442a13c |
Hashes for itk_totalvariation-1.0.1-cp39-cp39-win_amd64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 8fc83193df033e15b339dc69197c1ebe0c922d2b1bf977a403cff77a776c8af9 |
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MD5 | 77dd25b9b66474502276292f65a6d254 |
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BLAKE2b-256 | b1cbe2ee7bc4af05defd7eaec88ce63eefa95ee3d3d977f2a762bedfea1979db |
Hashes for itk_totalvariation-1.0.1-cp39-cp39-manylinux_2_28_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 43af627a1b6552041b17522347e177ea24afa918eae82e985deac413b49055e0 |
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MD5 | 3bb6782d14ab0cee2842c78b92abeb11 |
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BLAKE2b-256 | e70efee674bbeb9fa60c15ecec56b9ff1410168ac6eb997c713e83dffa73cbc1 |
Hashes for itk_totalvariation-1.0.1-cp39-cp39-manylinux_2_28_aarch64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 1e6f6cb8bfa69b8891391cd2dae9031bdf343bd6e232d26b916bcaf021daf51d |
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MD5 | 4df2d41e74c939dd8de23811d3970cc8 |
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BLAKE2b-256 | 356f1fa1ea794658726c40a988f3d732e20ba3f28cece9ec57019b88c15a2c01 |
Hashes for itk_totalvariation-1.0.1-cp39-cp39-manylinux_2_17_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | cf0503bba1242186e9793b44d5fd2a79a910caf2ac68cba31ec90d34ba8189c5 |
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MD5 | bae0656a0ead41fbb3426c9504b3fc4f |
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BLAKE2b-256 | a1251b7d84f1adc978d691a049a9b4d0dcbb5b138480b621c0c65b697cf62fab |
Hashes for itk_totalvariation-1.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 38c5f3fa5bf4493c7209932c6f55cdf2aac9c0f5f0f9de76a7668136626a2a68 |
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MD5 | 5d80f9d398bbcc0d2adc3432cfbb04c5 |
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BLAKE2b-256 | 1b76189d57a9573f18d6a0ceec40d9a2a768bcc8c93aaec2f759e5d316de8181 |
Hashes for itk_totalvariation-1.0.1-cp39-cp39-macosx_11_0_arm64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | b767b3443565233eca1c05d9a12f63f2176b0795b12c575ded13fa22d7b6d679 |
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MD5 | 4fa95469f0264ff3390b9db636f5c6a2 |
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BLAKE2b-256 | a28f8dab981ed523b8ac06147a13ff04b8b429e4f1a2e305f265a94e2972b57e |
Hashes for itk_totalvariation-1.0.1-cp39-cp39-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 9f798af7c81e11f884be61a80dd592884f015489264cdcecf0b2141ac155b036 |
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MD5 | 5a7349544849ae7d547f55364017e13d |
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BLAKE2b-256 | fcb165ab6099959d64376e8966eb6b92a725af30a2001f0c6a110f2b486ba153 |
Hashes for itk_totalvariation-1.0.1-cp38-cp38-win_amd64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 55b9859bd3b6e6d19218d4f9f18f76aacfe9b687cf1aa53ce45260e0ba86862c |
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MD5 | e17eaa8d8f43d4f64325e0dff396fe02 |
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BLAKE2b-256 | 9d62714a2050fa3abab1a0a52962dbc92304ac47ab281bf239467785d5a38ca1 |
Hashes for itk_totalvariation-1.0.1-cp38-cp38-manylinux_2_28_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 971e91071f4fdbfbf396052dc01839288c8a704470314bb20b50bf9651b25392 |
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MD5 | a234e94863ed4633db41faa47af1de52 |
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BLAKE2b-256 | feb5c27a135183e5fa347fc3a8a6ce277201b34d5d47b73f8fe4d15961fc4324 |
Hashes for itk_totalvariation-1.0.1-cp38-cp38-manylinux_2_28_aarch64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 52f2ddd09c8ddfd00d99c7230f775e2bd041946f65089abb7c668e9dde4b54ae |
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MD5 | 19743360d0b7fe20761485c575f6f21c |
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BLAKE2b-256 | 368874e9bb2d4d6077607e59380282d2b21f2fbbeaa5bb9f7a4abd207b8473b7 |
Hashes for itk_totalvariation-1.0.1-cp38-cp38-manylinux_2_17_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 3d3b249a465093be75c425fb2806e5e430fad0dd49bd020b96ef0350932d2f13 |
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MD5 | 1e498b6bd18b43592adc68f1f0c5f3e1 |
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BLAKE2b-256 | 55a5e049f744f403d489d59e38526c945db853abdac1a98dcbc7436f8b521bbe |
Hashes for itk_totalvariation-1.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6097069bbd83c1d73c83f56f98dc646a9d7fa4ddbc1374f3aa3f5b2878668a97 |
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MD5 | 579643e76b2946008b434bfea0df23d2 |
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BLAKE2b-256 | e1711ce5fe17a75a5a279ee15d371f554de9e3ca9517519be0c4f03032bee4a3 |
Hashes for itk_totalvariation-1.0.1-cp38-cp38-macosx_10_9_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 90816f176ec70f3d9c1e46e2296567345d0d6be1a500fe98c34eb9ffeefe5fed |
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MD5 | dbca707ba93a16aa9eff2b39550d5bae |
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BLAKE2b-256 | 60de7e8316fdeab7cb866e465000e2641ccec0f26ec63e8efac578373f204fa6 |