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An interactive visual shell for phylogenetics

Project description

ivy is a lightweight library and an interactive visual programming environment for phylogenetics. It is built on a powerful foundation of open-source software components, including numpy, scipy, matplotlib, and IPython.

ivy emphasizes interactive, exploratory visualization of phylogenetic trees. For example:

#!/usr/bin/env ipython
from ivy.interactive import *

root = readtree("primates.newick")
fig = treefig(root)

Documentation and other resources

http://www.reelab.net/ivy

Installation

  1. Install virtualenv.
  2. Install ivy: pip install ivy

Project details


Release history Release notifications

This version
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20120228

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20111004

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20110930

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20110601

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20110510

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20110405

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Filename, size & hash SHA256 hash help File type Python version Upload date
ivy-phylo-20120228.tar.gz (68.5 kB) Copy SHA256 hash SHA256 Source None Feb 29, 2012

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