An interactive visual shell for phylogenetics
ivy is a lightweight library and an interactive visual programming environment for phylogenetics. It is built on a powerful foundation of open-source software components, including numpy, scipy, matplotlib, and IPython.
ivy emphasizes interactive, exploratory visualization of phylogenetic trees. For example:
#!/usr/bin/env ipython from ivy.interactive import * root = readtree("primates.newick") fig = treefig(root)
Documentation and other resources
- Install virtualenv.
- Install ivy: pip install ivy
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