NWB conversion scripts and tutorials.
Convert Jaeger lab data to NWB format.
- FRET optical imaging (rsd)
- Intan electrophysiology (rhd)
- Labview behavioral data (txt)
- Optogenetics stimulation data (txt)
- Treadmill behavior (csv)
- Bpod behavioral data (mat)
Authors: Luiz Tauffer and Ben Dichter
Create a separate environment:
$ conda create -n env_jaeger python=3.7 pip
Activate environment and install dependencies
$ conda activate env_jaeger $ pip install jaeger-lab-to-nwb
1. Imported and run from a python script:
Examples for each experiment can be found here
2. Graphical User Interface:
To use the GUI, first install nwb-web-gui:
$ pip install nwb-web-gui
The GUI can be run from the terminal:
$ nwbgui-jaeger [experiment_name]
Current options for experiment names are:
bpod. The NWB Web GUI should open in your browser. If it does not open automatically (and no error messages were printed in your terminal), just open your browser and navigate to
The GUI eases the task of editing the metadata of the resulting
nwb file, it is integrated with the conversion module (conversion on-click) and allows for quick visual exploration the data in the end file with nwb-jupyter-widgets.
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Hashes for jaeger_lab_to_nwb-0.1.1-py3-none-any.whl