jaeger-lab-to-nwb
Convert Jaeger lab data to NWB format.
Currently includes:
- FRET optical imaging (rsd)
- Intan electrophysiology (rhd)
- Labview behavioral data (txt)
- Optogenetics stimulation data (txt)
- Treadmill behavior (csv)
- Bpod behavioral data (mat)
Authors: Luiz Tauffer and Ben Dichter
Install
Create a separate environment:
$ conda create -n env_jaeger python=3.7 pip
Activate environment and install dependencies
$ conda activate env_jaeger
$ pip install jaeger-lab-to-nwb
Use
1. Imported and run from a python script:
Examples for each experiment can be found here
2. Graphical User Interface:
To use the GUI, first install nwb-web-gui:
$ pip install nwb-web-gui
The GUI can be run from the terminal:
$ nwbgui-jaeger [experiment_name]
Current options for experiment names are: fret, labview, treadmill and bpod. The NWB Web GUI should open in your browser. If it does not open automatically (and no error messages were printed in your terminal), just open your browser and navigate to localhost:5000.
The GUI eases the task of editing the metadata of the resulting nwb file, it is integrated with the conversion module (conversion on-click) and allows for quick visual exploration the data in the end file with nwb-jupyter-widgets.
2 maintainers
Metadata
2 maintainers
Release files for jaeger-lab-to-nwb 0.1.1
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| File | Size | Uploaded | Provenance | Actions |
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| jaeger_lab_to_nwb-0.1.1.tar.gz | 21.8 kB | Without provenance | Details for jaeger_lab_to_nwb-0.1.1.tar.gz |
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| jaeger_lab_to_nwb-0.1.1-py3-none-any.whl | Python 3 | none | any | Details for jaeger_lab_to_nwb-0.1.1-py3-none-any.whl |
Total release size: 53.5 kB
Release files / jaeger_lab_to_nwb-0.1.1.tar.gz
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