Bioinformatics tools for Janis; the Pipeline creation helper
Project description
Janis - Bioinformatics
This repository contains tools and data types for Janis directly related to the bioinformatics field.
Refer to the documentation.
Data types
The data types are a way of encapsulating information about the file (including secondary files), and it allows clarity when connecting inputs and steps together (as you know a BAM file should be connected to BAM input).
Documentation
Documentation is generated on Janis. To generate new documentation you will need to:
- Commit your changes here,
- Update the submodule pointer on Janis,
- Checkout Janis (recursively),
- Run the regenerate script
janis/docs/regeneratedocumentation.py
, - Commit these changes and the documentation will autobuild on ReadTheDocs.
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