jenga 0.0.1a1

Jenga is an open source experimentation library that allows data science practititioners and researchers to study the effect of common data corruptions (e.g., missing values, broken character encodings) on the prediction quality of their ML models.

Jenga

Overview

Jenga is an open source experimentation library that allows data science practititioners and researchers to study the effect of common data corruptions (e.g., missing values, broken character encodings) on the prediction quality of their ML models.

We design Jenga around three core abstractions:

• Tasks contain a raw dataset, an ML model and a prediction task
• Data corruptions take raw input data and randomly apply certain data errors to them (e.g., missing values)
• Evaluators take a task and data corruptions, and execute the evaluation by repeatedly corrupting the test data of the task, and recording the predictive performance of the model on the corrupted test data.

Jenga's goal is assist data scientists with detecting such errors early, so that they can protected their models against them. We provide a jupyter notebook outlining the most basic usage of Jenga.

Note that you can implement custom tasks and data corruptions by extending the corresponding provided base classes.

We additionally provide three advanced usage examples of Jenga:

• Studying the impact of missing values
• Stress testing a feature schema
• Evaluating the helpfulness of data augmentation for an image recognition task

Installation

The following options are possible:

pip install jenga             # jenga is ready for the most corruptions (not images)
pip install jenga[all]        # install all dependencies, optimal for development
pip install jenga[image]      # also installs tensorflow ad image corruption/augmentation libraries
pip install jenga[validation] # also install tensorflow and tensorflow-data-validation necessary for SchemaStresstest

Research

Jenga is based on experiences and code from our ongoing research efforts:

• Sebastian Schelter, Tammo Rukat, Felix Biessmann (2020). Learning to Validate the Predictions of Black Box Classifiers on Unseen Data. ACM SIGMOD.
• Tammo Rukat, Dustin Lange, Sebastian Schelter, Felix Biessmann (2020): Towards Automated ML Model Monitoring: Measure, Improve and Quantify Data Quality. ML Ops workshop at the Conference on Machine Learning and Systems (MLSys).
• Felix Biessmann, Tammo Rukat, Philipp Schmidt, Prathik Naidu, Sebastian Schelter, Andrey Taptunov, Dustin Lange, David Salinas (2019). DataWig - Missing Value Imputation for Tables. JMLR (open source track)

Dependency Management & Reproducibility

1. Always keep your abstract (unpinned) dependencies updated in environment.yaml and eventually in setup.cfg if you want to ship and install your package via pip later on.
2. Create concrete dependencies as environment.lock.yaml for the exact reproduction of your environment with:

   conda env export -n jenga -f environment.lock.yaml
   

   For multi-OS development, consider using --no-builds during the export.
3. Update your current environment with respect to a new environment.lock.yaml using:

   conda env update -f environment.lock.yaml --prune
   

Installation for Development

In order to set up the necessary environment:

1. create an environment jenga with the help of conda,

   conda env create -f environment.yaml
   

2. activate the new environment with

   conda activate jenga
   

3. install jenga with:

   python setup.py install # or `develop`
   

Optional and needed only once after git clone:

4. install several pre-commit git hooks with:

   pre-commit install
   

   and checkout the configuration under .pre-commit-config.yaml. The -n, --no-verify flag of git commit can be used to deactivate pre-commit hooks temporarily.

Then take a look into the notebooks folder.

Note

This project has been set up using PyScaffold 3.2.2 and the dsproject extension 0.4. For details and usage information on PyScaffold see https://pyscaffold.org/.