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Tools for extracting information from jpHMM ( output.

Project description

jpHMM tools

jphmm_tools provides methods for extracting information from jpHMM [Schulz et al. NAR 2012] output.

It implements tool for

  • converting Los Alamos alignment file into a reference file suitable for jpHMM:
jphmm_ref -h
  • aligning sequences based on the jpHMM output:
jphmm_align -h
  • extracting sequence subtype information from the jpHMM output:
jphmm_subtype -h

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