jupyterlab-h5web 0.0.2

A JupyterLab extension to explore and visualize HDF5 file contents.

jupyterlab-h5web

A JupyterLab extension to explore and visualize HDF5 file contents. Based on h5web.

WARNING: This extension is still in active development. Please report any encountered issue.

Requirements

• JupyterLab >= 2.0

Install

Note: You will need NodeJS to install the extension.

pip install jupyterlab_h5web
jupyter lab build

Usage

Once the extension is installed, you can double-click on an HDF5 file or right-click -> View HDF5 contents to launch a tab.

This tab is composed of a sidebar, where you can explore the structure of the HDF5 file, and of a main area where the visualization of the selected entity takes place. This visualization is controlled by the upper-right button that can toggle between:

• Display: visualize datasets using Line, Heatmap or Matrix visualizations.
• Inspect: show the metadata and attributes of any entity

Troubleshoot

If you are seeing the frontend extension but it is not working, check that the jupyterlab_hdf extension is enabled:

jupyter serverextension list

If the jupyterlab_hdf is installed and enabled but you are not seeing the frontend, check the frontend is installed:

jupyter labextension list

If it is installed, try:

jupyter lab clean
jupyter lab build

Uninstall

pip uninstall jupyterlab_h5web
jupyter labextension uninstall jupyterlab-h5web