k-seq 0.4.1a0

Kinetic sequencing analysis by Chen lab at University of California, Santa Barbara

kinetic sequencing: high through-put kinetic parameter estimation for genetic encoded biomolecules

Issue report:

https://github.com/ynshen/k-seq/issues

Installation / update

This is the temporary installation for k-seq package before publication, we will upload to pypi so it could be installed through pip install k-seq

Step 1: Clone the this git repo to your local

> cd /dir/to/save/repo
> git clone https://github.com/ichen-lab-ucsb/k-seq.git

Step 2: run installation code

> cd /dir/to/save/repo/k-seq/
> sh ./install.sh

There might be a prop to uninstall the old k-seq package, if installed.

To varify the installation of package

> python -c "import k-seq"
# No error shows

Getting started examples

Getting started

Getting started notebook to run interactively: /examples/getting_started.ipynb

See documentation website for usage

TODO

• Clean up archived old code and notebooks