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kSpider sequence clustering software.

Project description

kSpider

kSpider

Clone kSpider

git clone https://github.com/mr-eyes/kSpider
cd kSpider

Clone kProcessor

git clone https://github.com/dib-lab/Kprocessor --branch indexFusionGenes --single-branch kprocessor
cd kProcessor
make
cd ..

Reproduce expirement 1 (kSpider Vs. CDHIT Benchmarking)

bash reproduce_exp1.sh

After it's done (pwd=kSpider/exp1/)

Automate CDHIT Benchmarking (Parallel Processing [All Threads])

bash ../scripts/parallelize_comparison.sh

Visualize results

bash ../scripts/visualize.sh

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Files for kSpider, version 1.0.1
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Filename, size kSpider-1.0.1-py3-none-any.whl (31.4 kB) File type Wheel Python version py3 Upload date Hashes View hashes
Filename, size kSpider-1.0.1.tar.gz (20.4 kB) File type Source Python version None Upload date Hashes View hashes

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