@dib-lab/kSpider
➤ Introduction
kSpider is a user-friendly command line interface program to perform sequence clustering. First, it creates an index using kProcessor for the source sequences. Second, it constructs a pairwise containment matrix through a single iteration over the index. Finally, it builds a graph from the pairwise matrix and applies a connected-components graph algorithm to extract the clusters with a user-defined containment threshold.
Documentations are hosted at https://dib-lab.github.io/kSpider
➤ Quick Installation (pip)
pip install kSpider
➤ Manual build / Development
Install dependencies
sudo apt-get install g++ swig cmake python3-dev zlib1g-dev libghc-bzlib-dev python3-distutils libboost-all-dev
git clone https://github.com/dib-lab/kSpider.git
cd kSpider
git submodule update --init --recursive
cmake -Bbuild
cmake --build build
bash build_wrapper.sh
➤ Authors
 |
 |
|---|---|
| Mohamed Abuelanin | Tamer Manosur |
➤ License
Licensed under MIT License.
1 maintainer
Metadata
1 maintainer
Release files for kSpider 2.3.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| kSpider-2.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.17+ x86-64 | Details |
| kSpider-2.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.9 | CPython 3.9 | Linux glibc 2.17+ x86-64 | Details |
| kSpider-2.3.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.8 | CPython 3.8 | Linux glibc 2.17+ x86-64 | Details |
| kSpider-2.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.7 | CPython 3.7 pymalloc | Linux glibc 2.17+ x86-64 | Details |
| kSpider-2.3.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl | CPython 3.6 | CPython 3.6 pymalloc | Linux glibc 2.17+ x86-64 | Details |
Total release size: 9.5 MB
Release files / kSpider-2.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | kSpider-2.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.9 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.11.1
|
Release files / kSpider-2.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | kSpider-2.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.9 MB |
| Tags | CPython 3.9 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
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|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.11.1
|
Release files / kSpider-2.3.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | kSpider-2.3.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.9 MB |
| Tags | CPython 3.8 Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
2ca19574e3329ddcee3c275f2fae5b755068b99bc25fa31923b4e35776e4d370
|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.11.1
|
Release files / kSpider-2.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | kSpider-2.3.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.9 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
1bbb2805cdfe56e9afcb9dfc8e011b78dcf8f302a96c2c64cdd9c80af5263944
|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.11.1
|
Release files / kSpider-2.3.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | kSpider-2.3.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 1.9 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.17+ x86-64 |
|
SHA-256 checksum How to use checksums |
2fa5a354fef838cb6601480b26466af4137776cb52bbda040a1aa2352c3b27d5
|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.1 CPython/3.11.1
|
