kSpider sequence clustering software.
Project description
kSpider
Clone kSpider
git clone https://github.com/mr-eyes/kSpider
cd kSpider
Clone kProcessor
git clone https://github.com/dib-lab/Kprocessor --branch indexFusionGenes --single-branch kprocessor
cd kProcessor
make
cd ..
Reproduce expirement 1 (kSpider Vs. CDHIT Benchmarking)
bash reproduce_exp1.sh
After it's done (pwd=kSpider/exp1/)
Automate CDHIT Benchmarking (Parallel Processing [All Threads])
bash ../scripts/parallelize_comparison.sh
Visualize results
bash ../scripts/visualize.sh
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Source Distribution
kSpider-1.0.1.tar.gz
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kSpider-1.0.1-py3-none-any.whl
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