View/Highlight KEGG Pathway
Project description
Generate Highlighted SVG/PNG for KEGG Pathway
Installation
pip install kegg_viewer
Examples
kegg_viewer -h
kegg_viewer -p ko00196
kegg_viewer -p ko00196,ko00197
kegg_viewer -p path.list
kegg_viewer -p path.list -g gene.list -c ./cache -O output
kegg_viewer -p path.list -g gene.list -m online
kegg_viewer -p path.list -g gene.list -t png
kegg_viewer -p path.list -g gene.list -t both
genelist examples
K08913 red
K08912 blue
LAMA2 blue
K02289 red
K20713 blue
K08910 #FF1188
example results
png mode
SVG Mode:
local# use local image as backgroundonline# use online image as backgroundbase64# convert background to base64, default and recommend!
TODOs
- add list, link method for KEGGRest
- prepare cache data(png/conf) for input organism
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