View/Highlight KEGG Pathway
Project description
Generate Highlighted SVG/PNG for KEGG Pathway
Installation
pip install kegg_viewer
Examples
kegg_viewer -h
kegg_viewer -p ko00196
kegg_viewer -p ko00196,ko00197
kegg_viewer -p path.list
kegg_viewer -p path.list -g gene.list -c ./cache -O output
kegg_viewer -p path.list -g gene.list -m online
kegg_viewer -p path.list -g gene.list -t png
kegg_viewer -p path.list -g gene.list -t both
genelist examples
K08913 red
K08912 blue
LAMA2 blue
K02289 red
K20713 blue
K08910 #FF1188
example results
png mode
SVG Mode:
local# use local image as backgroundonline# use online image as backgroundbase64# convert background to base64, default and recommend!
TODOs
- add list, link method for KEGGRest
- prepare cache data(png/conf) for input organism
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
kegg_viewer-1.0.2.tar.gz
(205.8 kB
view details)
File details
Details for the file kegg_viewer-1.0.2.tar.gz.
File metadata
- Download URL: kegg_viewer-1.0.2.tar.gz
- Upload date:
- Size: 205.8 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/1.15.0 pkginfo/1.5.0.1 requests/2.20.0 setuptools/40.6.3 requests-toolbelt/0.9.1 tqdm/4.32.1 CPython/2.7.14
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 47d9d2b5dcafa3de8069f674a2189fe38034b41a3e19240a7e29e41d19efa080 |
|
| MD5 | 5b387bf873f0cc9994cc8ce385863cd1 |
|
| BLAKE2b-256 | e4a29a29533f4d6d076b7d523f7b5def819a7a43d0d4448b34244bf91e16fe66 |
