khmer k-mer counting library
Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!
The official source code repository is at https://github.com/dib-lab/khmer and project documentation is available online at http://khmer.readthedocs.io. See http://khmer.readthedocs.io/en/stable/introduction.html for an overview of the khmer project.
See http://khmer.readthedocs.io/en/stable/user/getting-help.html for more details, but in brief:
Important note: cite us!
khmer is research software, so you should cite us when you use it in scientific publications! Please see the CITATION file for citation information.
The khmer library is a project of the Lab for Data Intensive Biology at UC Davis, and includes contributions from its members, collaborators, and friends.
pip install khmer pytest --pyargs khmer -m 'not known_failing and not jenkins and not huge and not linux'
See https://khmer.readthedocs.io/en/stable/user/install.html for more detailed installation instructions.
We welcome contributions to khmer from the community! If you’re interested in modifying khmer or contributing to its ongoing development see https://khmer.readthedocs.io/en/stable/dev/getting-started.html.
Release history Release notifications
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|Filename, size & hash SHA256 hash help||File type||Python version||Upload date|
|khmer-2.1.1-cp27-cp27m-manylinux1_x86_64.whl (11.5 MB) Copy SHA256 hash SHA256||Wheel||cp27||Jun 25, 2018|
|khmer-2.1.1-cp27-cp27mu-manylinux1_x86_64.whl (11.5 MB) Copy SHA256 hash SHA256||Wheel||cp27||Jun 25, 2018|
|khmer-2.1.1-cp35-cp35m-manylinux1_x86_64.whl (11.5 MB) Copy SHA256 hash SHA256||Wheel||cp35||Jun 25, 2018|
|khmer-2.1.1-cp36-cp36m-manylinux1_x86_64.whl (11.5 MB) Copy SHA256 hash SHA256||Wheel||cp36||Jun 25, 2018|
|khmer-2.1.1-cp37-cp37m-manylinux1_x86_64.whl (11.5 MB) Copy SHA256 hash SHA256||Wheel||cp37||Jul 23, 2018|
|khmer-2.1.1.tar.gz (8.5 MB) Copy SHA256 hash SHA256||Source||None||May 26, 2017|