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khmer k-mer counting library

Project description

Research software impact Supported Python versions khmer build status Test coverage BSD-3 licensed

khmer

Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!

The official source code repository is at https://github.com/dib-lab/khmer and project documentation is available online at http://khmer.readthedocs.io. See http://khmer.readthedocs.io/en/stable/introduction.html for an overview of the khmer project.

Getting help

See http://khmer.readthedocs.io/en/stable/user/getting-help.html for more details, but in brief:

Important note: cite us!

khmer is research software, so you should cite us when you use it in scientific publications! Please see the CITATION file for citation information.

The khmer library is a project of the Lab for Data Intensive Biology at UC Davis, and includes contributions from its members, collaborators, and friends.

Quick install

pip install khmer
pytest --pyargs khmer -m 'not known_failing and not jenkins and not huge and not linux'

See https://khmer.readthedocs.io/en/stable/user/install.html for more detailed installation instructions.

Contributing

We welcome contributions to khmer from the community! If you’re interested in modifying khmer or contributing to its ongoing development see https://khmer.readthedocs.io/en/stable/dev/getting-started.html.

Project details


Download files

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Files for khmer, version 2.1.1
Filename, size & hash File type Python version Upload date
khmer-2.1.1-cp27-cp27m-manylinux1_x86_64.whl (11.5 MB) View hashes Wheel cp27
khmer-2.1.1-cp27-cp27mu-manylinux1_x86_64.whl (11.5 MB) View hashes Wheel cp27
khmer-2.1.1-cp35-cp35m-manylinux1_x86_64.whl (11.5 MB) View hashes Wheel cp35
khmer-2.1.1-cp36-cp36m-manylinux1_x86_64.whl (11.5 MB) View hashes Wheel cp36
khmer-2.1.1-cp37-cp37m-manylinux1_x86_64.whl (11.5 MB) View hashes Wheel cp37
khmer-2.1.1.tar.gz (8.5 MB) View hashes Source None

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