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khmer k-mer counting library

Project Description

Research software impact Supported Python versions khmer build status Test coverage BSD-3 licensed

khmer

Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!

The official source code repository is at https://github.com/dib-lab/khmer and project documentation is available online at http://khmer.readthedocs.io. See http://khmer.readthedocs.io/en/stable/introduction.html for an overview of the khmer project.

Getting help

See http://khmer.readthedocs.io/en/stable/user/getting-help.html for more details, but in brief:

Important note: cite us!

khmer is research software, so you should cite us when you use it in scientific publications! Please see the CITATION file for citation information.

The khmer library is a project of the Lab for Data Intensive Biology at UC Davis, and includes contributions from its members, collaborators, and friends.

Quick install

pip install khmer
pytest --pyargs khmer -m 'not known_failing and not jenkins and not huge and not linux'

See https://khmer.readthedocs.io/en/stable/user/install.html for more detailed installation instructions.

Contributing

We welcome contributions to khmer from the community! If you’re interested in modifying khmer or contributing to its ongoing development see https://khmer.readthedocs.io/en/stable/dev/getting-started.html.

Release history Release notifications

This version
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2.1.1

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2.1

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2.1rc3

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2.0

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1.4.1

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1.4

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1.3

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1.2

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1.1

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1.0.1

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1.0

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0.8

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0.7.1

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0.7

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0.6.1

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0.6

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0.4

Download files

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Filename, size & hash SHA256 hash help File type Python version Upload date
khmer-2.1.1.tar.gz (8.5 MB) Copy SHA256 hash SHA256 Source None May 26, 2017

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